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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20109112_20119208_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20109112 - 20119208
Intron Length:
10097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAAGGTA
5'SS Class:
major
3'SS Sequence:
TATTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTATCTTATTT
Flanking Amino Acid:
LSAVSAVRQQTAVCDFERDN
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1
65.3
34.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
82.5
33.5
Minor 5ss
28.4
-2.5
3.7
36.8
42.2
Minor BPS
61.2
0.43
1.6
77.02
39.7

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640