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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20119333_20120600_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20119333 - 20120600
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
GSAAGDIPFQIIFRATILTM
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.3
0.86
0.7
83.4
31.4
Minor 5ss
35.2
-1.7
2.7
43.3
43.5
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640