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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20120769_20125771_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20120769 - 20125771
Intron Length:
5003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
ACTCTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAGTTTTTAAAG
Flanking Amino Acid:
KLSPGLSCCQVRFWYRLSQG
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
78.9
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.3
0.55
0.9
69.8
34.7
Minor 5ss
41.9
-0.9
3.5
64.8
46.5
Minor BPS
60.8
0.2
1.5
61.1
41

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640