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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20125882_20128857_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20125882 - 20128857
Intron Length:
2976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTATTTGAATT
Flanking Amino Acid:
DRDHTTNARHGTFIYFNGSC
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
72.9
31.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
26.8
-2.7
3.3
35
42.5
Minor BPS
64.4
0.53
1.4
80.95
34.8

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640