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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20129005_20137047_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20129005 - 20137047
Intron Length:
8043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
CTCTGTACAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTCAACTTAATG
Flanking Amino Acid:
DDSNEDPAACSNYTICNFET
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
34.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
67.9
0.4
1
62.5
37.3
Minor 5ss
34.9
-1.7
3.3
49.9
46.4
Minor BPS
61.5
0.22
1.6
65.07
42.9

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640