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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20140597_20146160_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20140597 - 20146160
Intron Length:
5564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AACTTCTTAACA
Flanking Amino Acid:
VLKALLYTNQEEHVLWENSM
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.2
0.45
0.9
64.8
36.5
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
75.2
0.79
1.2
74.55
36.8

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640