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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20146319_20150981_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20146319 - 20150981
Intron Length:
4663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
SLKSCSNNTEGCVVWLEAND
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
100
1.24
0.5
100
0
Major PPT
91.2
0.93
0.7
89.3
26.1
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640