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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20151126_20155457_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20151126 - 20155457
Intron Length:
4332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTCCTTTATCT
Flanking Amino Acid:
SFSEGCSPAFALQTSSFELG
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
79.8
35.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.3
0.75
0.7
81.5
30.1
Minor 5ss
43.1
-0.8
2.9
54.5
43.9
Minor BPS
72.7
0.79
1.5
89.39
35

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640