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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20159839_20159918_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20159839 - 20159918
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTGTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
CTTCCCTGGAAT
Flanking Amino Acid:
LPTDQEHVCQITFHYWISQG
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.5
37.4
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
82.7
0.74
0.8
77.1
37.1
Minor 5ss
45.7
-0.5
2.5
59.1
45.3
Minor BPS
56.4
0.28
1.7
74.96
41.4

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640