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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20160011_20163129_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20160011 - 20163129
Intron Length:
3119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTACCA
Flanking Amino Acid:
PYSDHSGNDTAYFLSLSSEM
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.8
81.3
35
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
64.7
0.46
1.6
73.92
38.7

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640