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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20163271_20166611_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20163271 - 20166611
Intron Length:
3341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGAGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTCTCATTT
Flanking Amino Acid:
CCGGSSDERQGSPSENCDFE
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
65
0.34
1
62.6
43.1
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
56.4
0.28
1.8
76.55
40.4

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640