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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20261651_20262689_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20261651 - 20262689
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGTT
5'SS Class:
major
3'SS Sequence:
CTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATCTCTTTATTT
Flanking Amino Acid:
IQSCCALTGEGLCQGLEWMT
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.6
35.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
37.5
-1.4
3.5
49.3
47
Minor BPS
64.9
0.55
1.6
77.64
39.7

Associated Gene:

Gene:
ARL5B
Ensembl Gene ID:
ENSAPLG00000024734
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036551
20261602 - 20275456
13855