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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20262842_20264046_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20262842 - 20264046
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
GAACTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATACTTTGAACT
Flanking Amino Acid:
EELYRMLAHEDLRKAAVLIF
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
62.5
0.28
1
52
42.4
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
59.3
0.37
1.4
73.48
36.8

Associated Gene:

Gene:
ARL5B
Ensembl Gene ID:
ENSAPLG00000024734
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036551
20261602 - 20275456
13855