About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20264131_20266939_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20264131 - 20266939
Intron Length:
2809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTGTACTTACAT
Flanking Amino Acid:
SWNTYYSNTEFIILVVDSID
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
86.6
0.82
0.6
81.5
30.5
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
57.2
0.3
1.9
78.27
43.6

Associated Gene:

Gene:
ARL5B
Ensembl Gene ID:
ENSAPLG00000024734
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036551
20261602 - 20275456
13855