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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20267088_20268375_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20267088 - 20268375
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTGTTTCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCATGATAT
Flanking Amino Acid:
NAGKTTILYQFLMNEVVHTS
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.1
0.75
0.7
82.3
29.8
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
47.9
-0
2.1
71.63
44.6

Associated Gene:

Gene:
ARL5B
Ensembl Gene ID:
ENSAPLG00000024734
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036551
20261602 - 20275456
13855