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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20277305_20278051_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20277305 - 20278051
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATACTTTTAAAA
Flanking Amino Acid:
YLTKVFRNNELITSLGAKET
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79
0.65
0.7
77.5
24.4
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
59.1
0.28
1.3
65.16
34.3

Associated Gene:

Gene:
NSUN6
Ensembl Gene ID:
ENSAPLG00000013473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025613
20277230 - 20295970
18741
ENSAPLT00000024567
20277230 - 20293044
15815
ENSAPLT00000014045
20277230 - 20296133
18904