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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20285425_20287893_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20285425 - 20287893
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTGTTTTTGATA
Flanking Amino Acid:
NVLPSHLFLQNLPSVVVSHV
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
77.9
0.63
1
76.5
37.7
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
67.5
0.55
1.1
72.69
33.6

Associated Gene:

Gene:
NSUN6
Ensembl Gene ID:
ENSAPLG00000013473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025613
20277230 - 20295970
18741
ENSAPLT00000024567
20277230 - 20293044
15815
ENSAPLT00000014045
20277230 - 20296133
18904