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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20288014_20288935_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20288014 - 20288935
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGATTTAAAA
Flanking Amino Acid:
THLATLMHDQGEVIAMDKIA
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.9
0.9
0.7
88.2
28.6
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
60.2
0.32
1.7
73.42
38.3

Associated Gene:

Gene:
NSUN6
Ensembl Gene ID:
ENSAPLG00000013473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025613
20277230 - 20295970
18741
ENSAPLT00000024567
20277230 - 20293044
15815
ENSAPLT00000014045
20277230 - 20296133
18904