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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20310634_20311463_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20310634 - 20311463
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTTTGTTAATG
Flanking Amino Acid:
IVYVKISSPKVLQRLIKSRG
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.5
0.78
0.8
80.4
31.5
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
57.1
0.08
2.1
66.07
42.7

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035967
20308498 - 20382384
73887
ENSAPLT00000026440
20303833 - 20543363
239531
ENSAPLT00000013757
20303833 - 20381762
77930
ENSAPLT00000040164
20303833 - 20380832
77000