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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20324073_20326451_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20324073 - 20326451
Intron Length:
2379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
FDFLKHRFEGRISITRVTAD
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.8
32.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
89.5
0.89
0.7
85.1
29.5
Minor 5ss
38.9
-1.3
2.8
53.8
42.8
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040164
20303833 - 20380832
77000
ENSAPLT00000035967
20308498 - 20382384
73887
ENSAPLT00000026440
20303833 - 20543363
239531
ENSAPLT00000013757
20303833 - 20381762
77930