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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20326917_20329639_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20326917 - 20329639
Intron Length:
2723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCAAT
U12 Branch Point Sequence:
TTCTGTTTTACA
Flanking Amino Acid:
KTADLFWQLTTEHIPPYDVV
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
73.5
33.2
Major BPS
49.7
-0
1.4
60.1
43.3
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
54.2
0.13
2.1
70.65
41.9

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040164
20303833 - 20380832
77000