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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20326917_20330320_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20326917 - 20330320
Intron Length:
3404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACCA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCAAT
U12 Branch Point Sequence:
TTCTGTTTTACA
Flanking Amino Acid:
KEKRMPFFKKTEHIPPYDVV
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
65.3
40.7
Major BPS
49.7
-0
1.4
60.1
43.3
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
37.8
-1.4
3.1
49.4
46.3
Minor BPS
54.2
0.13
2.1
70.65
41.9

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026440
20303833 - 20543363
239531