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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20326934_20334243_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20326934 - 20334243
Intron Length:
7310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GCAATGCTGAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
AAGTAATGAACA
Flanking Amino Acid:
SSRKSTPPSSAFSVLQTEHI
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
67.7
0.44
1
58
38.9
Major PPT
43.9
-0.3
1.7
41.7
42.9
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
47.5
-0.1
1.9
58.85
39.7

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013757
20303833 - 20381762
77930