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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20329717_20334243_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20329717 - 20334243
Intron Length:
4527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTAGTATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AATTCTTGAATT
Flanking Amino Acid:
SSRKSTPPSSASNSLGVKSA
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.7
0.62
0.9
73.9
40.3
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
69.3
0.68
1.3
80.6
34.9

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040164
20303833 - 20380832
77000