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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20330455_20334243_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20330455 - 20334243
Intron Length:
3789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TAATTCTGAATT
Flanking Amino Acid:
SSRKSTPPSSAIDIDATGLD
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71
0.47
1
65.5
40.3
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
67.5
0.63
1.4
78.86
37

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026440
20303833 - 20543363
239531