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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20334321_20335999_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20334321 - 20335999
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAACA
5'SS Class:
major
3'SS Sequence:
TGCTTTACTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTTGCTTTACT
Flanking Amino Acid:
QKAKQGKFYSSKSGGNSSSS
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.4
36
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
78.8
0.65
0.9
70.4
40
Minor 5ss
39.3
-1.2
2.8
50.5
45.5
Minor BPS
64
0.52
2.1
85.16
41

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035967
20308498 - 20382384
73887
ENSAPLT00000026440
20303833 - 20543363
239531
ENSAPLT00000013757
20303833 - 20381762
77930
ENSAPLT00000040164
20303833 - 20380832
77000