About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20336137_20340065_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20336137 - 20340065
Intron Length:
3929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GACTTTTTATTT
Flanking Amino Acid:
EAKDFLHVKEKFNNDWWIGR
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
52.7
0.16
1.5
64.73
40.6

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013757
20303833 - 20381762
77930
ENSAPLT00000040164
20303833 - 20380832
77000
ENSAPLT00000035967
20308498 - 20382384
73887
ENSAPLT00000026440
20303833 - 20543363
239531