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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20340189_20380751_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20340189 - 20380751
Intron Length:
40563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCTTTACTT
Flanking Amino Acid:
QAQAQLEKAKTKPVAFAVRT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
86.4
0.82
0.8
80.7
30.9
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
75.9
0.89
1.5
91.31
32.6

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013757
20303833 - 20381762
77930
ENSAPLT00000039343
20303833 - 20474070
170238
ENSAPLT00000035967
20308498 - 20382384
73887
ENSAPLT00000032202
20303833 - 20543363
239531
ENSAPLT00000026440
20303833 - 20543363
239531
ENSAPLT00000040164
20303833 - 20380832
77000