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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20380872_20382381_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20380872 - 20382381
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAATTTGG
5'SS Class:
major
3'SS Sequence:
TTTCATTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATT
Flanking Amino Acid:
MGSADSYTSRP
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
57.3
46.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.2
0.7
0.9
76.8
37
Minor 5ss
29.5
-2.4
3.8
37.9
42
Minor BPS
66.2
0.59
1.7
84.98
35.9

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035967
20308498 - 20382384
73887