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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20380872_20532122_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20380872 - 20532122
Intron Length:
151251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATT
Flanking Amino Acid:
DTTSNSFVRQGSADSYTSRP
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.2
0.7
0.9
76.8
37
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
66.2
0.59
1.7
84.98
35.9

Associated Gene:

Gene:
CACNB2
Ensembl Gene ID:
ENSAPLG00000013189
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032202
20303833 - 20543363
239531
ENSAPLT00000026440
20303833 - 20543363
239531