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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20389766_20391222_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20389766 - 20391222
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTTGGTG
5'SS Class:
weak_major
3'SS Sequence:
ATGTTTATTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCTCTTCTAACC
Flanking Amino Acid:
PSYTYTMHPLSGYISGMLLQ
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.2
54.4
42.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69.7
0.44
1.1
73.2
40.6
Minor 5ss
35.3
-1.7
3.5
47.2
48.3
Minor BPS
49.7
-0
1.7
59.44
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020048
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044166
20389561 - 20391359
1799