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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20574749_20580097_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20574749 - 20580097
Intron Length:
5349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GGTGTCTTATTC
Flanking Amino Acid:
MFLYLSLAEMLPEMTHIQTR
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
78.6
30
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
86.2
0.81
0.7
85.3
28.6
Minor 5ss
29.8
-2.3
3
37.3
41.2
Minor BPS
50.3
-0
1.7
59.06
40.4

Associated Gene:

Gene:
SLC39A12
Ensembl Gene ID:
ENSAPLG00000013036
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040309
20574620 - 20607357
32738
ENSAPLT00000013583
20574620 - 20609849
35230