About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20580286_20581781_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20580286 - 20581781
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTCTCTATG
Flanking Amino Acid:
GAAFSSSTETGDFAVLLSTG
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
65.6
35.4
Major BPS
80
0.75
1
78.6
31
Major PPT
85.5
0.8
0.8
81.5
29.3
Minor 5ss
31.9
-2.1
3
38.1
46.8
Minor BPS
53.8
-0
1.9
67.04
40.9

Associated Gene:

Gene:
SLC39A12
Ensembl Gene ID:
ENSAPLG00000013036
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013583
20574620 - 20609849
35230