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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20580286_20584632_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20580286 - 20584632
Intron Length:
4347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTCTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTCTCTATG
Flanking Amino Acid:
PPDSKVISTKRDFAVLLSTG
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
80.2
32.8
Major BPS
80
0.75
1
78.6
31
Major PPT
85.5
0.8
0.8
81.5
29.3
Minor 5ss
38.4
-1.3
2.7
48.1
34
Minor BPS
53.8
-0
1.9
67.04
40.9

Associated Gene:

Gene:
SLC39A12
Ensembl Gene ID:
ENSAPLG00000013036
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040309
20574620 - 20607357
32738