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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20581890_20584632_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20581890 - 20584632
Intron Length:
2743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
TCCTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TGTTGTTTGATT
Flanking Amino Acid:
PPDSKVISTKSKKISLLAIM
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
80.2
32.8
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
81.7
0.71
0.7
76.1
32.5
Minor 5ss
38.4
-1.3
2.7
48.1
34
Minor BPS
61.3
0.44
1.8
79.17
37.6

Associated Gene:

Gene:
SLC39A12
Ensembl Gene ID:
ENSAPLG00000013036
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013583
20574620 - 20609849
35230