Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20590156_20592373_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20590156 - 20592373

Intron Length:

2218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCCTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTTTAT

U12 Branch Point Sequence:

TTTTCCCTACAG

Flanking Amino Acid:

QSKLPPTTLEKYGYSTVAVL

Intron Amino Acid Position:

379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.3

26.4

Major BPS

63.5

0.34

1.4

57.4

49.1

Major PPT

90.4

0.91

0.6

85.1

22.6

Minor 5ss

36.8

-1.5

2.9

43.7

38.1

Minor BPS

53.3

-0

2.1

69.58

43.3

Associated Gene:

Gene:

SLC39A12

Ensembl Gene ID:

ENSAPLG00000013036

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040309

20574620 - 20607357

32738

ENSAPLT00000013583

20574620 - 20609849

35230