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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20607340_20609831_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20607340 - 20609831
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTCATTCAT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTGACCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
ATTCTCTGACCA
Flanking Amino Acid:
MCFCFSHPALGVVCSA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.3
55.7
43.1
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
60.9
0.25
1.1
60
39.9
Minor 5ss
33.6
-1.9
3
47.8
41.5
Minor BPS
53
0.09
1.7
67.94
38.1

Associated Gene:

Gene:
SLC39A12
Ensembl Gene ID:
ENSAPLG00000013036
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013583
20574620 - 20609849
35230