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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20635496_20636704_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20635496 - 20636704
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTCCTTCCAAA
Flanking Amino Acid:
RKGYICKKAKTSEKTEMSPE
Intron Amino Acid Position:
1365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
65.9
0.36
1
68.3
31
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
47.4
-0.2
2
66.41
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324