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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20637241_20638482_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20637241 - 20638482
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TAATACTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTGTTAATA
Flanking Amino Acid:
SQAHQECMRLVADLVSVGDY
Intron Amino Acid Position:
1271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.8
0.63
0.9
74.1
40.7
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
68.4
0.57
2
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324