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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20638636_20640189_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20638636 - 20640189
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GATCTCTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GATCTCTTACCA
Flanking Amino Acid:
KFFSVCKKSDVTAPTEPPQL
Intron Amino Acid Position:
1220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
79.8
35.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
70.9
0.47
1
63
42.7
Minor 5ss
43.1
-0.8
2.9
54.5
43.9
Minor BPS
58.3
0.26
1.6
66.62
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324