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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20640356_20642154_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20640356 - 20642154
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CAGCCTTGAAAT
Flanking Amino Acid:
PLWIGLNSNMTKGTYQWTDR
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
83.9
0.76
0.8
74.9
39.5
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
48.8
-0
1.6
60.86
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324