About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20643179_20645034_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20643179 - 20645034
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
CTTTCTCCAACA
Flanking Amino Acid:
HPEDGHNRLQYDCVALKRGP
Intron Amino Acid Position:
1053

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
78.2
0.63
0.8
74
29.7
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
56
0.19
1.9
72.2
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324