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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20645232_20646031_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20645232 - 20646031
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
LATITNEQVQAFLTYHLKDV
Intron Amino Acid Position:
987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.1
35.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
42.5
-0.8
3.2
57.8
47.2
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324