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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20647499_20648146_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20647499 - 20648146
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
AAACTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATATTTAAACT
Flanking Amino Acid:
ENCVVLNKKTGLWNDVNCGF
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
65.1
0.34
1.1
59.6
45
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
59.8
0.39
1.7
77.15
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324