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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20648859_20649871_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20648859 - 20649871
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTTGTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AAAGCACTAACA
Flanking Amino Acid:
NNQRKFLWKYILKNGKLESY
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.7
39.7
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
81.3
0.7
0.9
81.2
36.5
Minor 5ss
34.1
-1.8
3.2
44.2
43.7
Minor BPS
46.9
-0.2
2
58.42
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324