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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20650036_20650129_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20650036 - 20650129
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAG
U12 Branch Point Sequence:
CTGTGCAGAATA
Flanking Amino Acid:
LKPEPVGPSAMYEVTEDGWI
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
46.9
-0.1
1.4
58.7
38.1
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
44.7
-0.4
2.1
56.74
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324