Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20653364_20655250_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

20653364 - 20655250

Intron Length:

1887

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTACTCTTT

5'SS Class:

weak_major

3'SS Sequence:

ATATCTCACAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTCTTTCATA

Flanking Amino Acid:

FYTNWNSAMPGNEAGCVALR

Intron Amino Acid Position:

596

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.6

0.34

1.1

64.5

42.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

56.9

0.16

1.1

57.1

37.3

Minor 5ss

48.9

-0.1

3.1

70.6

41.9

Minor BPS

71.1

0.66

1.7

82.68

32.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012345

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012928

20634897 - 20668220

33324