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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20655400_20655854_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20655400 - 20655854
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CACCTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCATCCTCATCT
Flanking Amino Acid:
SGGYLTSIADRYEQAYLTSF
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.8
0.54
0.9
69.7
34.9
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
60
0.39
1.9
77.25
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324