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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20657675_20658039_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20657675 - 20658039
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
AAATTGCACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTCCTAAATT
Flanking Amino Acid:
QEDCVVMAGEDGYWADIPCD
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
54.1
0.09
1
44.8
41.7
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
74.3
0.84
1.6
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324