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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20658198_20658768_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20658198 - 20658768
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GTGTCTCTCACA
Flanking Amino Acid:
HGFILSQLGYKATDELWIGL
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
48.9
-0
2.1
64.47
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324